cgexplore.systems_optimisation.Chromosome¶

class cgexplore.systems_optimisation.Chromosome(name, present_beads, vdw_bond_cutoff, prefix, gene_dict, definer_dict, chromosomed_terms)[source]¶

Bases: object

Define the genes and properties of a chromosome.

Methods

`get_building_block_configurations`	Get the chromosomes building block configuration.
`get_building_blocks`	Get the chromosomes building blocks.
`get_forcefield`	Get chromosome forcefield.
`get_precursors`	Get the chromosomes precursors.
`get_separated_string`	Get chromosome name separated by - as string.
`get_string`	Get chromosome name as string.
`get_topology_information`	Get the chromosomes topology information.
`get_vertex_alignments`	Get the chromosomes vertex alignments.

Attributes

`name`
`present_beads`
`vdw_bond_cutoff`
`prefix`
`gene_dict`
`definer_dict`
`chromosomed_terms`

Parameters:

name (Sequence[int])
present_beads (Sequence[CgBead])
vdw_bond_cutoff (int)
prefix (str)
gene_dict (dict[int, tuple])
definer_dict (dict[str, tuple])
chromosomed_terms (dict[str, list[int]])

get_building_block_configurations()[source]¶

Get the chromosomes building block configuration.

Return type:: tuple

get_building_blocks()[source]¶

Get the chromosomes building blocks.

Return type:: tuple

get_forcefield()[source]¶

Get chromosome forcefield.

Return type:: ForceField

get_precursors()[source]¶

Get the chromosomes precursors.

Return type:: tuple

get_separated_string()[source]¶

Get chromosome name separated by - as string.

Return type:: str

get_string()[source]¶

Get chromosome name as string.

Return type:: str

get_topology_information()[source]¶

Get the chromosomes topology information.

Return type:: tuple

get_vertex_alignments()[source]¶

Get the chromosomes vertex alignments.

Return type:: tuple

chromosomed_terms: dict[str, list[int]]¶

definer_dict: dict[str, tuple]¶

gene_dict: dict[int, tuple]¶

name: Sequence[int]¶

prefix: str¶

present_beads: Sequence[CgBead]¶

vdw_bond_cutoff: int¶